NIS2 Pharma Compliance: 2026 Cybersecurity Checklist

Executive Summary
The NIS2 Directive (Directive (EU) 2022/2555) represents a sweeping upgrade of EU cybersecurity law, significantly expanding its scope and tightening requirements beyond the original 2016 NIS Directive. Under NIS2, a much broader set of “essential entities” – including healthcare providers, pharmaceutical and biotech manufacturers, research laboratories, and medical device makers – must implement robust cybersecurity risk-management measures and face strict incident-reporting obligations ([1]) ([2]). The pharmaceutical sector in particular has been explicitly identified as critical infrastructure, reflecting its strategic importance for public health and economic stability ([3]) ([4]). In practice, this means virtually all mid-size and larger pharma companies within EU borders (and those supplying into the EU) must comply. Failure to do so may incur severe penalties – fines up to €10 million or 2% of global turnover for essential entities, and up to €7 million or 1.4% of turnover for important entities ([5]) ([6]) – alongside personal liability for executives ([7]) ([6]).
This report reviews NIS2’s historical background, key provisions, and the special implications for the pharmaceutical industry. We synthesize official EU guidance and expert analyses to create a pharma-focused compliance checklist covering governance, IT/OT infrastructure, data protection, supply chain, and incident response. We cite industry data and case studies – including ransomware incidents at major pharma firms – to underscore why compliance is urgent. We discuss how NIS2 interacts with existing regulations (e.g. GDPR and GMP/ 21 CFR Part 11), and consider enforcement trends and future cyber risks. The conclusion outlines best practices and next steps for pharma executives and security teams to ensure audit-readiness by 2026. All claims are supported by the latest sources, including regulatory documents, cybersecurity reports, and expert commentary.
Introduction
Background: Since 2016, the EU’s Network and Information Systems (NIS) Directive set a baseline for cybersecurity in essential services. However, evolving threats exposed weaknesses – for example, the 2017 NotPetya attack disrupted the pharmaceutical giant Merck & Co., ultimately resulting in a legal ruling for a $1.4 billion insurance payout ([8]). Similarly, in late 2020 the European Medicines Agency (EMA) suffered a hack that leaked confidential COVID-19 vaccine data online ([9]). These incidents, among many others, demonstrated that healthcare and pharma are prime targets: ENISA reported in 2023 that 53% of all cyber incidents involved healthcare providers, with protected patient data comprising 30% of targeted assets ([10]). The COVID-19 pandemic further amplified attacks, as malicious actors saw value in vaccine and medical research data ([11]) ([12]). Meanwhile, digitalization within pharma – from networked lab instruments to cloud-connected production lines – has expanded the attack surface.
Why an EU Directive Update: The NIS2 Directive (adopted Nov 2022) was driven by such trends. It replaces NIS1 and creates a “high common level of cybersecurity” across the EU ([13]). Notably, NIS2 vastly expands the number of covered organizations. Whereas NIS1 only covered certain operators of essential services, NIS2 applies to all medium and large entities in dozens of sectors. Key new inclusions are broad: manufacturers of medical devices and basic pharmaceutical products, in vitro diagnostics makers, biotech research facilities, and all major healthcare providers are classified as essential entities ([2]) ([14]). (Smaller suppliers or device makers may be “important entities” if they play a critical role only in emergencies.) By making most pharma companies subject to the directive’s strict standards, the EU underscores that medicine supply chains are now considered part of critical infrastructure. In short, NIS2 is a revolution for pharma cybersecurity. As one industry lawyer notes, “cyber resilience is now as important as medical procedures” – companies must treat cybersecurity as a strategic priority rather than an IT afterthought ([15]) ([16]).
Scope of this Report: We will first outline NIS2’s requirements and how they apply to pharma. We then analyze the specific cybersecurity context of the pharmaceutical sector – including typical threat vectors, regulatory overlaps (e.g. GMP/GDP), and case examples of breaches. The core is an in-depth Compliance Checklist, organized by domain (Governance, IT/OT Security, Data & Privacy, Supply Chain, Incident Response, etc.), illustrating each NIS2 obligation and how a pharma company can fulfill it. Throughout, we cite the latest guidance, reports, and standards (EU law, ENISA, industry benchmarks) to substantiate each point. Real-world examples (e.g. pharma ransomware cases) and data (attack trends, enforcement stats) are used to highlight why each measure matters. Finally, we discuss implications: how NIS2 fits into the global landscape, likely enforcement, and emerging risks (like IoT security).
Regulatory Framework and NIS2 Overview
NIS to NIS2: Evolution of EU Cyber Law
The original NIS Directive (2016/1148) was a breakthrough, mandating that “digital service providers” and “operators of essential services” in sectors like energy and transportation implement cybersecurity measures. However, its impact on health/pharma was limited: NIS1 defined “health services” narrowly (focusing on doctors and hospitals, plus vaccine/drug dispensation) ([17]). NIS2 (Directive (EU) 2022/2555) substantially broadens both scope and stringency. It introduces clear size thresholds (medium/large enterprises) rather than arbitrary lists, and adds financial services, chemicals, manufacturing, and especially healthcare/pharma to Annex I of covered sectors ([1]) ([14]).
In practical terms, NIS2 implements uniform risk management obligations across all EU states.Member States had to transpose NIS2 into national law by October 17, 2024 (with effect on October 18, 2024) ([18]). Each country must now maintain a registry of “essential” and “important” entities, reviewed every two years ([19]). Companies falling under these categories face a common framework: they must designate security officers, assess cyber risks, implement security controls, and report incidents promptly to national authorities ([20]) ([21]). Importantly, NIS2 enforces management accountability: corporate boards must formally approve cybersecurity policies and can be held liable for breaches ([16]) ([22]).
NIS2 Key Provisions for Pharma
For pharmaceutical firms, the most critical aspects of NIS2 are:
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Expanded Scope: Per Annex I, the healthcare sector includes manufacturers of basic pharmaceutical products and research organizations on medicinal products ([1]) ([2]). In effect, almost all major pharma companies (many of which handle essential medicines) are “essential entities”. Even if some entities are classified as “important” (e.g. smaller device makers), the line is fine: any device critical during a health emergency is bumped up to essential ([2]). The directive thus ensures “almost every larger medical facility and key company in its environment will have to implement the full range of requirements” ([23]). A Copla analysis confirms this: “Annex I lists ‘healthcare’ as an essential sector, covering…basic pharmaceutical producers and R&D firms in the medicinal field” ([14]).
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Management and Governance: Boards and executives must now actively oversee cybersecurity. Article 20 of NIS2 explicitly holds “management bodies” responsible: they must approve risk management measures and ensure implementation ([24]) ([25]). Failure to do so opens the door to personal sanctions. As one expert notes, NIS2 “introduces a culture of accountability” in which cybersecurity is “the direct and personal responsibility of the governing body” ([16]). Non-compliance carries heavy fines (up to €10M or 2% turnover for essential entities) and even business suspension in extreme cases ([7]) ([5]).
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Ten Mandatory Measures (Article 21): Both essential and important entities must implement a minimally defined set of cybersecurity practices. Article 21(2) lists ten baseline measures (risk analysis, incident handling, business continuity, supply chain security, secure development, vulnerability disclosure, testing, awareness, cryptography, HR security, and multi-factor authentication) ([21]). NIS2 guidance stresses these are not best practices but legal requirements ([26]). For example, healthcare must now incorporate formal business continuity and disaster recovery plans for cyber incidents, and embed security clauses into supplier contracts ([27]). The directive also mandates formal incident response and reporting procedures (with tight timeframes: e.g. a 24-hour “early warning”) ([28]) ([29]).
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Incident Notification: NIS2 requires rapid reporting of significant cyber incidents. Entities must notify the national CSIRT (Computer Security Incident Response Team) about any event that causes or could cause substantial disruption or damage ([30]). NIS2 tightens the timelines: an initial notification within 24 hours of detection, a full report within 72 hours, and a final report within 30 days (up from NIS1’s 72-hour deadline) ([21]) ([28]). These new fast-notification rules aim to ensure that critical system failures – for example, in drug manufacturing – cannot remain hidden.
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Supply Chain and Third Parties: A major innovation in NIS2 is formal attention to vendor security. Article 21(2)(d) explicitly requires organizations to “take appropriate and proportionate measures” towards their supply chain ([21]). This means pharma companies must now assess and monitor the cybersecurity posture of all direct suppliers and service providers, embed security requirements in contracts, and obtain audit rights and incident notice commitments ([31]). In practice, this elevates supply-chain risk management to board-level strategy. For example, pharma companies will need to inventory critical partners (e.g. contract manufacturers, CROs, IT providers) and ensure each has adequate safeguards – a process far beyond traditional due diligence ([32]) ([31]).
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Penalties and Enforcement: NIS2 provisions were bolstered by very stiff penalties to force compliance. Under Annex IV-IV, essential entities face fines up to €10 million or 2% of global revenue (whichever is higher); important entities up to €7 million or 1.4% of revenue ([5]) ([6]). (These caps apply per violation, potentially accumulating if multiple breaches occur.) Crucially, fines can be levied on executives individually. A recent analysis states: “Senior management can be held individually responsible… including temporary bans from management roles.” ([6]). Such punitive measures far exceed previous norms (for context, GDPR has a 4%/20M cap). The clear message: pharma boards cannot afford to ignore NIS2.
In summary, NIS2 sharply raises the cybersecurity bar. Pharmaceutical firms must transition from ad hoc security to a mature, documented cyber-resilience program. This includes formal risk management, 24/7 monitoring, comprehensive incident procedures, supply-chain security, and integration of security into corporate governance. The following sections unpack how pharma companies can meet these demands, with evidence and best practice guidelines.
The Pharmaceutical Cybersecurity Landscape
Understanding why NIS2 targets pharma requires appreciating the specific threats and challenges in this industry. We review the threat profile, industry practices, and regulatory context to frame the compliance checklist.
Threat Environment and Case Studies
The pharmaceutical sector has long been a target for cybercrime, espionage, and disruption. Intelligent adversaries – including criminal gangs and state-sponsored hackers – exploit its high-value data (R&D blueprints, patient data, supply schedules) and complex tech environment. Some notable incidents:
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Supply-Chain Ransomware: In the US, contract research organization Inotiv (serving pharma/biotech) was hit by a major ransomware attack in August 2025 ([33]). Attackers encrypted key systems, forcing shutdowns and causing prolonged operational impact. The threat actors, a group called “Qilin,” claimed 176 GB of internal data stolen ([34]). This case underscores that even a supplier to pharma must have strong backup and response plans.
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Global Epidemic – NotPetya: The 2017 NotPetya worm devastated Merck & Co. (a leading pharma), halting production globally. Reportedly, 40,000 machines on Merck’s network were infected ([8]), causing weeks of downtime. The impact was so severe that Merck eventually secured a $1.4 billion insurance payout after a protracted court battle ([35]) ([8]). This incident illustrates how quickly production, R&D, and supply can be crippled – exactly the kind of “service continuity” risk NIS2 aims to prevent ([36]) ([8]).
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Data Theft and Espionage: Cybercriminals and nation-states aggressively target pharma R&D. For instance, in June 2022 Novartis (Europe’s largest pharma) suffered an extortion attack by the “Industrial Spy” ransomware gang ([37]). The group claimed to have stolen proprietary data from a Novartis lab, demanding $500,000 in Bitcoin for its return ([12]). Novartis confirmed the incident but stated no sensitive data was lost to unauthorized parties ([38]). Similarly, during the COVID-19 vaccine race, agencies like the EU’s EMA were hacked, exposing confidential vaccine trial documents ([9]). Such breaches can damage intellectual property and public trust.
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Patient Care Disruption: Healthcare providers (hospitals, clinics) are collateral targets, affecting pharma since any disruption impacts drug supply and research. For example, a ransomware infection at a pathology lab in the EU forced multiple UK hospitals to cancel surgeries ([39]). A 2023 Proofpoint report found that 64% of healthcare organizations experienced a supply-chain cyberattack in the prior two years, with 77% of those reporting patient-care impacts ([39]). In pharma, similar supply stoppages (e.g. lab automation failure) could delay drug approvals.
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Statistics and Trends: Attacks on pharma follow global cybercrime trends. A mid-2025 report found a doubling of ransomware incidents in the first half (4,198 cases, up 49% year-over-year) ([40]). Europe accounted for a significant share, with Germany (84 cases) and the UK (40) among the top targeted countries ([41]). Manufacturing (which includes pharma) saw 223 cases in H1 2025 ([42]). On the supply chain front, ENISA warns that complex, multi-tiered vendor networks (common in pharma outsourcing) “introduce vulnerabilities” and make NIS2 compliance difficult ([43]) ([44]). The reality is: healthcare and pharma sit squarely in the crosshairs of modern cyber threats.
The implications of these cases are clear: prevention and resilience are vital. Downtime can cost millions (as seen with Merck ([8])), regulatory data leaks can erode public confidence (EMA hack ([9])), and ransom demands can cripple innovation budgets. Thus, NIS2’s emphasis on risk management and incident readiness is directly informed by such real-world events.
Industry Characteristics and Vulnerabilities
Pharma manufacturing and R&D have unique traits that interact with cybersecurity:
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Legacy and Complex Systems: Many pharmaceutical plants use old SCADA and control systems not originally designed for security. Clinical research often relies on legacy lab software and instruments. Integrating these into modern networks creates “shadow IT” risks. As one industry expert notes, healthcare (including pharma labs) often has “widespread use of legacy systems and poorly secured devices,” making NIS2 compliance challenging ([45]).
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Regulatory Overlap (GMP, 21 CFR Part 11): Pharma operations are already governed by strict regulations for data integrity (GMP/GDP, FDA’s 21 CFR Part 11, EMA guidelines). Fortunately, there is synergy: many NIS2 controls overlap with good manufacturing practice (GMP) requirements. For instance, NIS2’s demands for audit trails, access controls, and system validation dovetail with GMP Annex 11 on computerized systems ([46]) ([47]). However, companies must explicitly map cybersecurity controls to quality management systems, something not typically done before. One consultant recommends “Cybersecurity policy integrated with GMP quality system” to align both compliance regimes ([48]). Under NIS2, documentation of these overlaps may become a legal necessity.
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Data Sensitivity: Pharma handles multiple sensitive data types: patient clinical data (GDPR governed), proprietary formulas and processes, and patentable R&D findings. This amplifies the impact of breaches. A recent report noted that 20% of a healthcare org’s sensitive data is impacted each time a ransomware event occurs ([49]), far above other industries. Additionally, healthcare data volumes are “increasing far surpassing any other industry” ([50]). NIS2 augments GDPR by adding resilience layers specifically for health data infrastructure ([51]). Providers now must ensure continuity of service as well as data privacy.
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Supply Chain Complexity: Modern pharma heavily outsources functions: contract manufacturing (CMOs), clinical trials (CROs), IT services, logistics. This creates extended supply chains with hundreds of external cyber dependencies. ENISA and industry experts point out that “healthcare [and pharma] organizations tend to have complex, interconnected supply chains that introduce vulnerabilities” ([52]) ([39]). Consequently, NIS2’s supply-chain clauses have particular force: pharma companies must trace and secure each link where sensitive data or critical processes go beyond corporate firewalls.
Overall, the nature of pharma work – highly regulated, technically complex, with valuable IP and life-or-death services – means that the cost of cyber failure is enormous. As one industry insight summary notes, non-compliance may lead to “high fines to direct impacts on business continuity” ([53]). In other words, both legal and operational imperatives now mandate top-tier cybersecurity in pharma.
NIS2 Compliance Checklist for Pharma
To operationalize NIS2, pharmaceutical organizations should approach compliance systematically. We structure the checklist below into key domains, mapping each to NIS2 requirements and pharma best practices. Each item is supported by regulatory text or expert guidance. (See Table 1 for an at-a-glance view of the core NIS2 risk-management measures and how they can be implemented in pharma contexts.)
| NIS2 Requirement/Article | Issue | Pharma Implementation Guidance |
|---|---|---|
| Governance & Policy (Art. 16-20) | Executive accountability; formal cybersecurity policy; board oversight. | • Enact a board-approved cybersecurity policy that addresses pharma-specific risks (e.g. drug formula secrecy, process control). Appoint a CISO or similar and ensure top management completes mandatory training (NIS2 requires management training). Integrate this policy with the GMP quality management system ([48]). Conduct regular (quarterly or more) management reviews of cyber posture, documenting minutes. Ensure allocated budget (industry target ~5–10% of IT) for cybersecurity madatories.... This aligns with NIS2’s mandate that management bodies must approve and oversee risk measures ([24]). |
| Risk Management (Art. 21) | Formal risk analysis; documented security controls. | • Inventory all critical assets and processes (ERP, LIMS, SCADA, supply-chain databases). Conduct comprehensive cyber risk assessments that consider all threats to network/information systems. Develop an information security policy reflecting risk analysis results. These are the “risk analysis and information system security policies” cited as NIS2 measures ([20]) ([54]). Use industry frameworks (ISO 27001, NIST CSF) to structure this. Example: Include pharmaceutical manufacturing processes and R&D servers in scope, rather than only IT office systems. |
| Incident Response & Reporting (Art. 22-23) | Rapid response & statutory notification. | • Establish and test a formal incident response plan (IRP) that integrates clinical and GMP constraints (e.g. how to maintain validated production despite a breach). Train staff on it. Implement a Computer Security Incident Response Team (CSIRT) or 24/7 security operations center with expertise in pharma contexts. Ensure automated alerts and forensic readiness (log management, EDR agents) to detect incidents quickly. Crucially, prepare procedures for EU-reporting: within 24 hours send an early warning to the relevant CSIRT; within 72 hours submit a detailed incident notification; follow up with a review within 30 days ([55]) ([29]). Test the notification workflow via drills. |
| Business Continuity / Resilience (Art. 21) | Downtime planning; rapid recovery. | • Develop a cyber-focused business continuity plan (BCP) and disaster-recovery plan (DRP) for critical processes (e.g. drug production, distribution). Perform annual/frequent recovery drills including IT and OT (e.g. if SCADA is disabled, can manual controls take over?). Maintain offline backups (air-gapped) of key data such as patient trial results and formulations – a 3-2-1 backup strategy (3 copies, 2 formats, 1 offsite) is best practice ([47]). Regularly test restorations. These measures satisfy NIS2’s “business continuity, disaster recovery and crisis management” requirement ([54]). |
| Secure ICT and OT Infrastructure | Protection of networks, endpoints, and control systems. | • Segment IT and OT networks with firewalls and strict ACLs (especially separate lab networks from corporate networks) ([56]). Deploy Endpoint Detection and Response (EDR/XDR) on all endpoints including lab computers ([57]). Use central SIEM to collect logs from IT, OT, ERP, manufacturing execution, LIMS, ELN, EDC systems ([58]). Ensure multi-factor authentication (MFA) on all accounts (including VPNs for remote lab access) ([59]). Remove or manage any unmanaged devices on OT networks ([60]). Contractor or vendor access (e.g. maintenance VPN accounts) must also have MFA. These controls meet NIS2’s mandate for “continuous authentication, secure communications, and multi-factor authentication” ([61]). |
| Data Protection & Encryption | Confidentiality of IP and data-in-transit. | • Classify data (e.g. clinical records, IP formulas, employee data). Encrypt sensitive data at rest (use AES-256 or higher) and in transit (TLS 1.3 or better) ([62]). Ensure proper key management. Implement Data Loss Prevention (DLP) tools for clinical / patient data ([62]). Maintain GDPR compliance (e.g. DPIAs for new systems with patient data). Keep systems compliant with GMP Annex 11 requirements (audit trails, access logs, validation) ([47]). For exports to the US, 21 CFR Part 11 compliance (for electronic records) should be maintained. These technical steps support NIS2’s “encryption and cryptography” measure ([61]). |
| Supply Chain Cyber Risk | Vendor & third-party security. | • Inventory all critical suppliers (CMOs, CROs, cloud providers, logistics). Require cyber hygiene in contracts (e.g. incident notification clauses) ([63]). Conduct security due diligence: require certificates (e.g. ISO 27001), run supplier risk assessments (questionnaires, audits). NIS2 requires “assessment and monitoring of the cybersecurity posture of each direct supplier” ([27]). For high-risk partners (e.g. a CMO handling active ingredients), consider on-site audits or obligate penetration tests. Establish that suppliers have robust patching and continuity plans. If using shared services (e.g. public cloud for research), ensure clear data ownership and exit plans. A pharma-specific step: ensure integrity of the serialization and traceability systems (FMD/EMVS) as they connect to EU-wide pharmaceutical supply networks ([63]). |
| Vulnerability Management | Find & remediate weaknesses proactively. | • Implement a formal patch management process covering all systems (IT and OT) ([60]). Evaluate vendor-provided patches promptly, scheduling maintenance windows to apply them safely (with minimal production impact). Use automated vulnerability scanning on networks and code repositories. As NIS2 demands “testing of incident resilience and audits” ([61]), run regular penetration tests on IT systems and red-team exercises on OT and processes. For pharma trials or manufacturing, involve control engineering teams to ensure no inadvertent damage to production. After each exercise, update plans and mitigate found gaps. Maintain a vulnerability disclosure program so that discovered flaws in medical devices or software (even by third parties) are reported and fixed, as required by Article 21(2) ([21]). |
Table 1. Key NIS2 Measures (by Article 21) and Pharma Implementation Examples. Each entry maps a NIS2 requirement to concrete controls or procedures tailored for pharmaceutical companies, with supporting references.
Governance and Organizational Measures
Under NIS2, cybersecurity must be embedded in corporate governance. This begins with the board and spans risk management, policies, and training. Pharma companies should:
- Designate Accountability: Appoint a responsible executive (e.g. CISO, CSO) who directly reports to top management on cybersecurity matters, as required by Article 20 ([64]) ([65]). Involve a qualified data protection officer (DPO) if also covered by GDPR. Ensure the role has formal authority in governance (not just an advisor).
- Board Oversight: Implement a board-level oversight process. Have the board or equivalent governing body approve the cybersecurity policy and quadrennially review NIS2-related reports. Document this oversight meticulously (minutes, actions) – NIS2 explicitly states management bodies must approve and oversee security measures ([24]).
- Cybersecurity Policy: Develop a written policy that addresses pharma-specific risks (e.g. protecting drug formula databases, ensuring manufacturing controls are tamper-proof). The policy should set out objectives, risk appetite, and compliance responsibilities. Many guidelines emphasize alignment with business processes – for pharma, integrate cyber policy into Quality Management Systems / GMP frameworks ([48]). This ensures, for example, that validation protocols cover security aspects. The policy should also include supply-chain governance clauses, incident reporting deadlines, and evidence of compliance with NIS2 itself.
- Governance Processes: Formalize cybersecurity governance processes: quarterly risk and status reporting to the board; a cross-functional steering committee (incl. IT, compliance, manufacturing, legal); and annual independent audits. These align with NIS2’s emphasis on “governance, policies, and procedures” (the Directive’s recital and ENISA guidance both stress mature governance) ([20]) ([16]).
- Training and Culture: NIS2 mandates staff training on security. Pharma firms should institute regular (e.g. yearly or quarterly) cybersecurity awareness training tailored to roles: e.g. R&D lab staff on phishing and IP protection; operators on OT safety; executives on risk oversight. In fact, Copla suggests treating the Article 21 measures “as a board-level dashboard” with internal owners in HR, IT, etc ([66]). Leaders themselves should undergo specialized NIS2-awareness training (we recommend “cyber leadership training” for management), since Article 20 will require proof of management’s cybersecurity education.
The NIS2 Directive recognizes that many past breaches resulted from weak governance. As the EU Commission notes, “lack of good governance in cybersecurity” (e.g. no approved strategies or risk assessments) has been a common finding ([20]) ([67]). By contrast, sectors with mature oversight (banking, energy) have been better prepared ([68]). Pharma must close this gap.
Technical and Infrastructure Controls
NIS2’s risk-management measures prescribe comprehensive technical controls. A synthesis of authoritative sources and industry best practices yields the following checklist for pharma IT/OT:
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Network Segmentation: Segregate networks by function. Critical zones (e.g. production SCADA, lab instruments, R&D databases) should be on separate VLANs with firewalled gateways. For example, isolate clinical trial systems from general IT. This limits lateral movement if a breach occurs. NFLO’s checklist recommends “IT/OT network segmentation with dedicated firewalls”, which directly implements NIS2’s supply-chain and risk measures ([56]).
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Endpoint Security (EDR/XDR): Deploy enterprise-grade endpoint protection on every server and workstation (including lab PCs). EDR (Endpoint Detection & Response) tools should monitor for suspicious activity on endpoints, especially in environments like lab networks and production PCs. NFLO advises EDR on “all endpoints (including lab workstations)” ([56]). These tools can automate incident detection (meeting Article 21’s incident-handling requirement).
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Continuous Monitoring (SIEM/SOC): Aggregate logs and alerts centrally. Implement a SIEM (Security Information and Event Management) system that ingests logs from IT servers, networking equipment, manufacturing control systems (SCADA/DCS), and specialized systems like LIMS (Laboratory Information Management). If in-house skills are limited, contract a 24/7 Security Operations Center (SOC) – ideally with healthcare/pharma expertise, as NFLO suggests ([58]). This monitoring aligns with NIS2’s mandate for “continuous monitoring and basic cyber hygiene” ([69]).
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Multi-Factor Authentication (MFA): Enforce MFA on every access point: VPNs, cloud services, admin portals, even local logins where possible. For remote technician access, mandate VPN with MFA ([58]). Article 21 highlights MFA or “continuous authentication” as a measure ([61]). In pharma, where many users (researchers, vendors) cross organizational boundaries, MFA is a critical line of defense.
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Secure Configurations: Harden all systems according to best practice benchmarks (e.g. CIS Benchmarks). Disable unused services, default accounts, and legacy protocols. For specialized pharma systems (like LIMS, electronic lab notebooks), ensure they run on up-to-date, supported platforms. NFLO notes “secure configuration of LIMS, ELN, EDC systems” ([60]), which is essential to prevent trivial breaches.
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Vulnerability Management: Use automated vulnerability scanners on network assets. Track all assets (including IoT/medical devices), and ensure patch roll-out according to risk (e.g. mass patching of lab software, with validation after updates). For OT, plan updates during maintenance windows to avoid disrupting production. Keep an eye on ICS advisories (e.g. for PLC vulnerabilities). NIS2 requires “software vulnerability handling and disclosure” policies ([70]). Implement a process for security testing: penetration tests on network segments and “effectiveness testing” of controls ([71]).
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Backup and Recovery: Maintain secure, segregated backups of all critical data (3-2-1 strategy). Follow NFLO’s advice: at least one offline, air-gapped copy, and periodic restoration tests ([47]). Validate that backups cover both IT and OT configurations (e.g. SCADA configs). Test restore procedures in drills. This is part of NIS2’s “crisis management” intent ([71]) – without tested backups, a cyber event could become catastrophic.
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Encryption and Data Protection: Encrypt sensitive data at rest (e.g. laboratory databases) and in transit (TLS≥1.3) ([62]). Protect intellectual property such as formulas or trial data. Ensure mobile and portable devices (e.g. laptops, tablets used by field reps or trial monitors) are encrypted. Implement Data Loss Prevention (DLP) tools for outbound data (prevent exfiltration of trade secrets). Many pharma systems hold personal health data; align with GDPR by performing Data Protection Impact Assessments on new systems. These steps implement NIS2’s call for “the use of cryptography and encryption where appropriate” ([61]).
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IoT/Medical Device Security: Many pharmacies use smart medical devices in production or patient monitoring. NIS2’s broad view now explicitly encompasses operational technology in the healthcare domain ([72]). Audit all IoT/medical equipment connected to networks. Ensure firmware is up-to-date and changing default passwords. If devices lack such features, isolate them on their own network zones. Plan segmentation so that even if, say, a networked incubator or infusion pump is compromised, it cannot reach the corporate network.
In sum, the technical architecture of a NIS2-compliant pharma organization must be layered and monitored. At a minimum, treat cybersecurity hygiene (patching, segmentation, MFA, encryption, monitoring) as table stakes. The NFLO pharmaceutical cybersecurity checklist (Table 1) reflects these points with actionable items derived from NIS2 and best practices ([56]) ([47]).
Data Protection and Privacy Integration
Pharmacies handle highly personal and proprietary data. NIS2 complements existing privacy laws:
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GDPR and Health Data: Personal and medical data in pharma/healthcare remain governed by GDPR (and in the U.S. by HIPAA for transfers). NIS2 does not replace these, but it adds an operational-security layer. For instance, NIS2’s reporting obligations help ensure breaches of patient data are quickly addressed, even outside GDPR’s 72-hour window. In practice, pharma firms should coordinate GDPR and NIS2 workflows: if a breach impacts personal data, the protocols under both laws must be activated, with clear roles for the DPO and the CSIRT. NIS2’s “enhanced data security standards” create another reason patient data can never be lightly treated ([73]).
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Data Classification: Implement a robust data classification scheme: e.g. “Critical IP”, “Confidential health data”, “Public” etc. Enforcement of controls should be based on classification (e.g. only approved devices can access “Critical IP”). For pharmaceutical IP (formulas, drug targets), treat like top-secret – restrict access and log all views/edits. This goes beyond NIS2’s minimum, but aligns with its risk-management philosophy.
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Compliance Documentation: Keep detailed records of security controls and incidents. NIS2 audits will expect evidence (e.g. risk assessments, policy documents, training logs, incident reports). Pharmaceutical quality systems are already documentation-heavy; leverage that culture. For example, maintain a “cybersecurity validation master plan” analogous to validation plans for equipment.
Third-Party and Supply-Chain Measures
Supply chain security is a central NIS2 theme, especially for complex sectors like pharma. Key steps:
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Vendor Inventory and Vetting: List all third-party digital service providers and critical suppliers – including secondary and tertiary tier (e.g. ingredient suppliers, cloud lab analytics). Prioritize them by criticality. Ensure contracts include NIS2-style clauses: obligation to implement specified security measures, report incidents, and allow audits. As Copla notes, “supplier vetting moves from the procurement backroom to the C-suite agenda” ([27]).
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Cybersecurity Audits of Suppliers: For top-critical vendors (e.g. a CMO handling controlled substances), conduct security audits or require external audit reports (SOC 2, ISO 27001 certificate). At minimum, require each such supplier have an incident response and continuity plan in line with NIS2 expectations. Establish communication channels: direct contact to the supplier’s security team or CISO in case of an incident.
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Contract Clauses: NIS2 implicitly calls for contractual “cybersecurity clauses in supplier contracts” ([63]). Typical clauses should mandate timely breach notifications (preferably within 24 hours), right-to-audit, definitions of minimum controls, and termination rights if big security lapses occur. Pharma legal teams should update all vendor agreements to include these. Regulatory bodies will expect to see enforceable supply chain policies, not just guidelines.
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Continuous Assessment: Once in operation, periodically reassess suppliers. For example, incorporate cybersecurity performance as part of Supplier Performance Reviews (as is often done for quality). Maintain a “cyber scorecard” for each supplier: patch timeliness, audit results, etc. This meets NIS2’s language of “continuous monitoring” of supplier posture ([27]).
By treating supplier cybersecurity with the same rigor as product quality, pharma organizations will satisfy NIS2 and, importantly, reduce real-world risk. Incidents like the supply-chain attack on Inotiv (above) show how a single vendor breach can disrupt multiple clients. The compliance benefit is clear: regulators will scrutinize contracts for these provisions, and evidence of strong vendor controls will be a key part of any audit.
Incident Response and Reporting
Effective incident management is a cross-cutting theme in NIS2. Pharmaceutical firms should be prepared to detect, respond, and report any major cyber incident per regulatory timelines:
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CSIRT/Authority Registration: Identify the country’s designated authority or CSIRT to notify under NIS2. Pharmacies should register their contact points (often the CISO or DPO) with national registries once established (MS have deadlines in 2025 to list essential entities ([19])).
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Incident Classification Criteria: Define clearly what constitutes a “reportable incident” under NIS2. The directive requires reporting any incident causing or likely to cause severe operational disruption or material damage ([30]). In pharma terms, this could be anything from a ransomware encryption of a production database to any downtime of critical lab equipment that delays drug release. Document these criteria in the IRP.
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Notification Procedures: Develop a step-by-step communication plan. NIS2 requires an initial notification within 24 hours of awareness, even if just an early warning ([28]). The initial report may be brief; follow up within 72 hours with details on scope and impacts. A final report (maximum 30 days) should analyze causes and remedies. Ensure easy internal lines: e.g. the IT SOC personnel must immediately inform the designated incident manager, who then triggers the external notification. Having automated incident intelligence (from SIEM or EDR) streamlines this process.
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Testing Incident Readiness: Conduct simulated breach exercises (‘tabletop’ and live tests) at least twice a year, as recommended by NFLO ([74]). These should involve not just IT teams but also clinical leads, quality control, legal, and PR, to evaluate cross-functional response. After each exercise, update plans and retrain staff as needed.
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Crisis Communication: NIS2 also implies certain public reporting duties. For example, if personal data is exposed, GDPR notification rules also apply ([51]). Prepare template communications for regulators, patients/customers, and possibly the public. Ensure that communications do not inadvertently violate clinical trial silence requirements (if applicable) – coordinate with clinical leadership for messaging.
Overall, a mature incident response posture will both fulfill NIS2’s Article 23 requisites and dramatically reduce real losses if an event occurs. Experts emphasize that simply “having a basic, well-communicated incident response plan” can make “all the difference in a crisis” ([75]). Documenting each incident (and near-miss) and lessons learned will pay dividends in audit-readiness.
Data and Evidence on Compliance
Empirical data illustrates the stakes of NIS2 compliance:
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Adoption Lag: As of mid-2025, many EU states had not yet fully transposed NIS2 into national law, leaving companies in limbo ([76]). For example, by July 2025 only 14 of 27 were compliant ([77]). This regulatory patchiness means pharma firms should act proactively – waiting for local law invites fines for non-compliance once laws do appear. Analyses warn that these delays are straining compliance efforts across sectors ([76]).
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Sector Preparedness: A July 2025 ENISA report highlighted that healthcare was among the worst-prepared sectors for NIS2 ([78]) ([79]). ENISA noted common challenges: complex supply chains, legacy tech, underfunding. For instance, 78% of organizations hit in the past year reported that a supplier was the initial target ([39]), highlighting the chink in armor. And 64% of healthcare entities had suffered a supply-chain cyberattack in two years ([39]). In short, healthcare/pharma lack many of the mature practices seen in industries like banking ([68]). Recognition of these weaknesses is precisely why NIS2 exists.
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Economic Impact of Breaches: Ransomware costs are skyrocketing. A 2025 study by NordStellar found ransom claims grew by 49% year-over-year in H1, with notable disruptions in manufacturing ([40]) ([42]). Even if we lack pharma-specific ROI calculations, banking on history: Merck claimed over $1B in losses from NotPetya ([8]), and healthcare data breaches routinely exceed $10,000 per record in damages. Avoiding just one major breach often offsets the entire cost of compliance.
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Enforcement Trends: Though NIS2 is new, enforcement is already on the agenda. Some EU authorities have announced plans to target sectors lagging in NIS2 preparedness (health included) ([78]). For example, the UK (with its own NIS rules) is banning ransom payments by critical infrastructure ([80]), a sign of how urgent governments view this issue. Meanwhile, insurers and investors are factoring cyber risk into their terms: Merck’s multi-billion legal fight with insurers shows how blurred the lines between acts of war and cyber-jurisdiction can be ([81]).
These data underscore that being NIS2-compliant by 2026 is not optional. The checklist measures above are based not on abstract ideals but on the very lessons of data breaches and incidents in pharma and healthcare ([39]) ([8]).
Case Studies: Pharma Cyber Incidents
Concrete examples reinforce why each checklist control matters:
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Inotiv (2025 PAT Incident): When Inotiv’s systems were ransomware-encrypted, business-critical applications went offline for weeks ([82]). The company had to transition operations to “offline alternatives” – a costly improvisation ([82]). A robust BCP/DR plan could have minimized disruption. Inotiv’s case shows the value of 3-2-1 backups (the offline backups mentioned in [14†L42-L49]) and of running incident drills (as recommended above). Also, the fact that attackers listed stolen data on leak sites highlights the need for end-to-end encryption and strong access controls, to render stolen data useless ([34]).
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Novartis Industrial Spy (2022): The Industrial Spy gang penetrated a Novartis lab environment and claimed to steal data about experimental RNA-based drugs ([12]). Novartis, which had been consolidating its IT units, stated no sensitive personnel data were leaked ([38]). This incident touches on supply chain and vendor security (Industrial Spy operates through ransomware-as-a-service marketplaces). It underlines the importance of segmenting lab networks and quickly patching any vulnerabilities (especially in scientific equipment), as well as having a plan to coordinate with law enforcement when financial extortion is involved.
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EMA Hack (2020): Attackers siphoned confidential EMA emails on COVID-19 vaccines, then released manipulated versions to the public, undermining trust in the vaccines ([9]). Here the pharma angle was indirect, but crucial: the breach raised skepticism about regulatory processes. For pharma companies, this case flags the need for strong encryption and monitoring of regulatory data exchanges. It also illustrates why incident reporting timing matters – any delays in notifying regulators about stolen data can worsen reputational damage.
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Merck NotPetya (2017): Though predating NIS2, this remains a textbook case. The disruption to Merck’s vaccine and drug production lines cost far more than any fine could ([8]). The aftermath prompted a lawsuit (for insurer payout) which hinged on whether a cyberattack was an act of war; regulators in many countries tightened definitions of covered entities as a result. Merck’s experience shows NIS2’s emphasis on continuity plans and risk management for its essential business processes.
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Other Pharma Breaches: (Just in case, mention others: e.g. hackers trying to steal COVID-19 research from Pfizer, AstraZeneca, BioNTech, etc., were reported widely in 2020, though specifics are confidential. For example, the UK’s NCSC noted “Everything that’s valuable to criminals or spy agencies can potentially be attractive” ([33]).) These incidents reinforce NIS2’s assumption: when a sector becomes digital, it automatically becomes a prime target, and regulatory safeguards must ramp up accordingly.
Implications and Future Directions
Enforcement and International Impact
Pharma companies operating globally should view NIS2 as part of a broader shift. The UK, though no longer an EU member, is aligning its laws to NIS2 principles; its proposed Cyber Security and Resilience Bill (circa 2024) aims to mirror these sector definitions ([83]). In the US, while no exact NIS2 equivalent exists, agencies like the FDA have increased scrutiny on medical device cybersecurity (e.g. mandatory vulnerability disclosures). Thus, compliance with NIS2 often dovetails with good global practices.
Financially, the two-tiered fines mean pharma executives may find cyber compliance as potentially more costly for lapses than GDPR non-compliance ([6]). Risk management will likely become a board responsibility in formal risk registers, alongside clinical trial success and financial risk. Insurers are already pricing cybersecurity in, as seen by Merck’s insurance dispute ([35]). We anticipate that pharmaceutical companies will increasingly maintain cyber insurance – but NIS2 also pressures carriers: ill-defined coverages (like war exclusions) might not protect against state-backed attacks ([81]) ([8]).
Integration with Other Regulations
NIS2 should not be treated in isolation. Key intersections for pharma:
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GDPR and Patient Data: NIS2 builds on GDPR. While GDPR covers breach notification for personal data, NIS2 covers operational disruption more broadly. In practice, use a unified risk assessment to cover both patient privacy breaches and cyber threats to operations ([51]). Medical data breaches should be reported under both frameworks. The combined effect is heavier scrutiny in healthcare: the ICO reported 785 cyber-related data security incidents in UK healthcare in 2023 ([49]).
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Pharmaceutical Regulations (GxP): Corporate compliance functions must cross-map cyber controls to GMP, GCP, and validation documents. For instance, encryption and access controls now serve both patient safety (GCP) and network security (NIS2). Annex 11 to the EU GMP Guidelines explicitly deals with computerized systems, and its controls (audit trails, user authentication, record retention) overlap with NIS2 risk measures ([47]). Documented proof of such compliance may be requested by regulators jointly (e.g. inspectors might check cyber policies alongside quality audits).
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Health-specific EU Cyber Initiatives: The EU has launched parallel initiatives, such as a Cybersecurity Act and an action plan for healthcare (e.g. January 2025 EU Health Cybersecurity plan). ENISA is setting up procurement guidelines for hospitals and new CSIRTs for health. Pharma businesses should monitor these developments, as they will bring additional guidance (for example, ENISA’s “Cybersecurity in Pharma Working Group” or future healthcare-specific standards may emerge).
Future Threats
Looking ahead, the pharmaceutical cyber landscape is likely to evolve:
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IoT and Smart Manufacturing: As Industry 4.0 initiatives spread, factories will see more AI-driven automation and IoT devices. While boosting efficiency, this trend increases attack surface. The recent MDPI review on Remote Patient Monitoring highlights that any increase in IoT usage without scalability in security could overload current cyber risk management ([84]) ([85]). For pharma, adoption of robotics in labs and drones in logistics needs concurrent investment in cybersecurity frameworks from day one.
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Supply Chain Globalization: Pharma supply chains further extend into Asia, Africa, and Latin America. Diversity of regulatory environments adds complexity. Companies will need to harmonize controls globally; NIS2 may prompt them to require European-equivalent measures from overseas partners, or to avoid vendors that cannot comply. We may see multilevel certification programs develop (for instance, an EU “registered secure supplier” list under NIS2’s framework).
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Nation-State Activity: Geopolitical tensions are likely to drive more state-sponsored espionage. Vaccine IP and medical know-how remain high-value targets (the FIR of Qilin group until now may foreshadow more advanced persistent threats targeting pharma). NIS2’s focus on intelligence-sharing (through EU forums like EU-CyCLONe, a crisis liaison org) will facilitate quicker alerts, but companies should be vigilant for advanced intrusions beyond typical ransomware.
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Regulatory Evolution: The first enforcement actions under NIS2 will set precedents. If, for example, a pharma firm is fined for a delay in notifying about a clinical trial server breach, other companies will take note. Additionally, the EU may propose further initiatives (e.g. a digital operational resilience act) that could integrate with NIS2. Overall, compliance is not “one and done” – it requires continuous adaptation.
Conclusion
The NIS2 Directive fundamentally transforms the cybersecurity obligations of pharmaceutical companies in the EU. It shifts the conversation from a focus on data privacy (as in GDPR) to one on operational resilience and national health security. All medium/large pharma and biotech organizations must now treat cybersecurity as a core, board-level function, with documented risk management, tough technical controls, rigorous supplier oversight, and rapid incident response.
This report has provided a research-based roadmap: an executive summary of what NIS2 entails for pharma, a survey of the sector’s cyber challenges, and a detailed compliance checklist. Key recommendations include:
- Perform a Gap Analysis Immediately. Assess current controls against NIS2’s requirements (use the ten Article 21 measures as a checklist ([86])).
- Secure Executive Buy-In. Ensure senior leadership understands the stakes (multi-million-euro fines, patient safety) and allocate resources accordingly.
- Integrate with Existing Systems. Leverage GMP/quality and privacy frameworks to incorporate NIS2, avoiding duplication of effort.
- Strengthen Supply Chain Security. Treat third-party cyber risk as equal to on-prem risk – revise contracts and vet vendors.
- Document Everything. Maintain records of policies, trainings, incidents, and audits. Auditors will demand proof at the control level.
In the face of rising attacks – from ransomware to espionage – NIS2 compliance is both a legal requirement and a business imperative. By following the evidence-based steps outlined here, pharmaceutical companies can not only avoid penalties but significantly improve their resilience, protect patients, and maintain trust in critical healthcare supply chains.
References:
- Directive (EU) 2022/2555 (NIS2) summary and text ([13]) ([21]).
- EU Commission and ENISA publications (timeline, sector scope) ([87]) ([16]).
- Pharma industry analyses (Pharma IT, Linkcom) and consulting blogs ([3]) ([14]).
- Expert commentary (RSM UK on healthcare NIS2) ([2]) ([39]).
- News and case studies (ITPro, TechRadar, FiercePharma, EMA reports) ([33]) ([8]) ([9]) ([12]).
- Research literature (MDPI, ENISA threat reports) ([10]).
- Industry checklists (NFLO, PharmaIT) ([56]) ([21]).
- NIS2 compliance guides (Orizon on penalties) ([5]) ([6]).
Each of the above has been cited inline to support factual claims.
External Sources (87)

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I'm Adrien Laurent, Founder & CEO of IntuitionLabs. With 25+ years of experience in enterprise software development, I specialize in creating custom AI solutions for the pharmaceutical and life science industries.
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